Download VAMPhyRE applications and test datasets
This page contains links for downloading VAMPhyRE applications. VAMPhyRE is available without cost
for accademic aplications. Versions for Linux, Mac OS X and Windows are provided.
Update June, 2020:New version of VAMPhyRE suite of programs available
| Software | Description | Links |
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VAMPhyRE suite: The software suite includes the basic applications: Virtual Hybridization (VH5cmdl), Virtual Analysis Fingerprinting Tool (VFAT), phylip_to_mega and Treerename. |
Linux 64
bits Mac OS X 64 bits MS Windows 64 bits |
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Dotfinger: Dotfinger is a graphic application which can display track files produced during the fingerprint comparisons with VFAT. This tool can help to compare genome sequences, throught their Virtual Fingerprints. | |
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Characters: Characters is an alternative tool for processing genomic fingerprints. Comparison of fingerprints can produce a table of homologous characters that can be analyzed with this tool to test several distance models. The program can perform boostrap analysis to test grouping confidence. The program can be be used for proccess of character tables from other aproaches. Data must be provided as a CSV file. | |
| HPV test dataset | HPV test dataset: This is a collection of complete sequences of the Human Papillomavirus collected from GenBank. This set can be used for a rapid demonstration of the procedures for calculating Virtual Genomic Fingerprints, Fingerprint comparison and phylogenetic analysis (see the tutorial files). | hpv.tar.gz hpv.zip |
| Bacterial test dataset | Bacterial test dataset: This is a more complex data set which can be used for the phylogenomic analysis of bacterial genomes. Data set includes both complete and draft genome sequences to illustrate how these types of genomic sequences can be used for the calculation of Fingerprints and Phylogenomic analysis (see tutorial files). | bacterial.tar.gz bacterial.zip |
| Perl Scripts | Perl Scripts: This is a collection of scripts that are aimed to illustrate how different analysis with the VAMPhyRE program suite can be performed. Analysis include parameter optimization, analysis automation and bootstrap analysis. | scripts.tar.gz |
